HL_7NWH_092

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7NWH|1|9|A|500, 7NWH|1|9|C|502, 7NWH|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_092 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2615

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7NWH|1|9|C|498
7NWH|1|9|G|499
7NWH|1|9|A|500
7NWH|1|9|C|501
7NWH|1|9|C|502
7NWH|1|9|C|503
7NWH|1|9|G|504

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain YY

40S ribosomal protein S24