HL_7NWH_112

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7NWH|1|9|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_112 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.5793

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7NWH|1|9|A|1614
7NWH|1|9|U|1615
7NWH|1|9|U|1616
7NWH|1|9|G|1617
7NWH|1|9|C|1618
7NWH|1|9|A|1619
7NWH|1|9|A|1620
7NWH|1|9|U|1621
7NWH|1|9|U|1622
7NWH|1|9|A|1623
7NWH|1|9|U|1624
7NWH|1|9|U|1625

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain PP

40S ribosomal protein uS19

Chain SS

40S ribosomal protein uS13

Chain dd

S29