HL_7NWI_009

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

7NWI|1|5|U|224, 7NWI|1|5|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_009 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.2545

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7NWI|1|5|C|222
7NWI|1|5|G|223
7NWI|1|5|U|224
7NWI|1|5|G|225
7NWI|1|5|G|226

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

Ribosomal protein L26