HL_7NWI_030

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_030 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.2206

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWI|1|5|G|1886
7NWI|1|5|G|1887
7NWI|1|5|A|1888
7NWI|1|5|U|1889
7NWI|1|5|G|1890
7NWI|1|5|A|1891
7NWI|1|5|A|1892
7NWI|1|5|C|1893

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain e

eL32

Chain f

eL33