HL_7NWI_049

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

7NWI|1|5|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_049 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.2849

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NWI|1|5|G|3614
7NWI|1|5|G|3615
7NWI|1|5|U|3616
7NWI|1|5|G|3617
7NWI|1|5|C|3618

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain R

60S ribosomal protein L19

Chain W

60S ribosomal protein L24-like protein