HL_7NWI_053
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 7NWI|1|5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_053 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.1559
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NWI|1|5|G|3757
7NWI|1|5|U|3758
7NWI|1|5|A|3759
7NWI|1|5|A|3760
7NWI|1|5|C|3761
7NWI|1|5|U|3762
7NWI|1|5|A|3763
7NWI|1|5|U|3764
7NWI|1|5|G|3765
7NWI|1|5|A|3766
7NWI|1|5|C|3767
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain K
- mRNA
Coloring options: