3D structure

PDB id
7NWI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
Experimental method
ELECTRON MICROSCOPY
Resolution
3.13 Å

Loop

Sequence
GUAAUUC
Length
7 nucleotides
Bulged bases
7NWI|1|9|U|160, 7NWI|1|9|U|161
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NWI_084 not in the Motif Atlas
Homologous match to HL_4V88_188
Geometric discrepancy: 0.263
The information below is about HL_4V88_188
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7NWI|1|9|G|156
7NWI|1|9|U|157
7NWI|1|9|A|158
7NWI|1|9|A|159
7NWI|1|9|U|160
7NWI|1|9|U|161
7NWI|1|9|C|162

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain GG
40S ribosomal protein S6
Chain YY
40S ribosomal protein S24

Coloring options:


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