HL_7NWI_087

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

7NWI|1|9|C|324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_087 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3936

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7NWI|1|9|C|322
7NWI|1|9|C|323
7NWI|1|9|C|324
7NWI|1|9|C|325
7NWI|1|9|C|326
7NWI|1|9|G|327
7NWI|1|9|U|328
7NWI|1|9|G|329

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6