HL_7NWI_089
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- AUCAGGGU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_089 not in the Motif Atlas
- Geometric match to HL_7RQB_057
- Geometric discrepancy: 0.2664
- The information below is about HL_7RQB_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53619.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7NWI|1|9|A|415
7NWI|1|9|U|416
7NWI|1|9|C|417
7NWI|1|9|A|418
7NWI|1|9|G|419
7NWI|1|9|G|420
7NWI|1|9|G|421
7NWI|1|9|U|422
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain JJ
- 40S ribosomal protein S9
- Chain LL
- 40S ribosomal protein S11
- Chain WW
- Ribosomal protein S15a
- Chain XX
- Ribosomal protein S23
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