HL_7NWI_097

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGCGGGGCC

Length

9 nucleotides

Bulged bases

7NWI|1|9|G|786, 7NWI|1|9|G|787, 7NWI|1|9|G|788

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_097 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3925

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NWI|1|9|G|751
7NWI|1|9|G|752
7NWI|1|9|C|753
7NWI|1|9|G|786
7NWI|1|9|G|787
7NWI|1|9|G|788
7NWI|1|9|G|789
7NWI|1|9|C|790
7NWI|1|9|C|791

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6