HL_7NWI_101

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_101 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1103

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7NWI|1|9|A|957
7NWI|1|9|G|958
7NWI|1|9|G|959
7NWI|1|9|U|960
7NWI|1|9|G|961
7NWI|1|9|A|962
7NWI|1|9|A|963
7NWI|1|9|A|964
7NWI|1|9|U|965
7NWI|1|9|U|966

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain K

mRNA

Chain OO

S14