HL_7NWT_049

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7NWT|1|1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWT_049 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0596

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7NWT|1|1|G|1949
7NWT|1|1|G|1950
7NWT|1|1|U|1951
7NWT|1|1|A|1952
7NWT|1|1|A|1953
7NWT|1|1|G|1954
7NWT|1|1|U|1955
7NWT|1|1|U|1956
7NWT|1|1|C|1957

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L14