HL_7NWT_075

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7NWT|1|2|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWT_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0541

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7NWT|1|2|G|259
7NWT|1|2|G|260
7NWT|1|2|U|261
7NWT|1|2|A|262
7NWT|1|2|A|263
7NWT|1|2|C|264
7NWT|1|2|G|265
7NWT|1|2|G|266
7NWT|1|2|C|267

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20