HL_7NWT_077

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWT_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0726

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NWT|1|2|A|320
7NWT|1|2|A|321
7NWT|1|2|C|322
7NWT|1|2|U|323
7NWT|1|2|G|324
7NWT|1|2|A|325
7NWT|1|2|G|326
7NWT|1|2|A|327
7NWT|1|2|C|328
7NWT|1|2|A|329
7NWT|1|2|C|330
7NWT|1|2|G|331
7NWT|1|2|G|332
7NWT|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20