HL_7NWW_028

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

7NWW|1|1|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWW_028 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.3926

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

7NWW|1|1|G|1063
7NWW|1|1|C|1064
7NWW|1|1|U|1065
7NWW|1|1|U|1066
7NWW|1|1|A|1067
7NWW|1|1|G|1068
7NWW|1|1|A|1069
7NWW|1|1|A|1070
7NWW|1|1|G|1071
7NWW|1|1|C|1072
7NWW|1|1|A|1073
7NWW|1|1|G|1074
7NWW|1|1|C|1075

Current chains

Chain 1

23S rRNA

Nearby chains