3D structure

PDB id
7O1A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
7O1A|1|AA|A|968, 7O1A|1|AA|G|971
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O1A_021 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.099
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7O1A|1|AA|G|963
7O1A|1|AA|A|964
7O1A|1|AA|U|965
7O1A|1|AA|2MG|966
7O1A|1|AA|5MC|967
7O1A|1|AA|A|968
7O1A|1|AA|A|969
7O1A|1|AA|C|970
7O1A|1|AA|G|971
7O1A|1|AA|C|972

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain B8
Transfer RNA; tRNA

Coloring options:


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