HL_7O5B_008

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

7O5B|1|A|C|338, 7O5B|1|A|G|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1565

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7O5B|1|A|G|328
7O5B|1|A|A|329
7O5B|1|A|C|330
7O5B|1|A|U|331
7O5B|1|A|G|332
7O5B|1|A|A|333
7O5B|1|A|G|334
7O5B|1|A|A|335
7O5B|1|A|C|336
7O5B|1|A|A|337
7O5B|1|A|C|338
7O5B|1|A|G|339
7O5B|1|A|G|340
7O5B|1|A|C|341

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20