HL_7O5B_033
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAGUUGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 7O5B|1|U|G|18, 7O5B|1|U|U|19, 7O5B|1|U|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O5B_033 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.18
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O5B|1|U|C|13
7O5B|1|U|A|14
7O5B|1|U|G|15
7O5B|1|U|U|16
7O5B|1|U|U|17
7O5B|1|U|G|17|||A
7O5B|1|U|G|18
7O5B|1|U|U|19
7O5B|1|U|U|20
7O5B|1|U|A|21
7O5B|1|U|G|22
Current chains
- Chain U
- tRNA
Nearby chains
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 50S ribosomal protein L5
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