HL_7O5B_040
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGUAAGCAA
- Length
- 9 nucleotides
- Bulged bases
- 7O5B|1|X|G|92, 7O5B|1|X|C|93, 7O5B|1|X|A|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O5B_040 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.3171
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
7O5B|1|X|U|87
7O5B|1|X|G|88
7O5B|1|X|U|89
7O5B|1|X|A|90
7O5B|1|X|A|91
7O5B|1|X|G|92
7O5B|1|X|C|93
7O5B|1|X|A|94
7O5B|1|X|A|95
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain g
- Signal recognition particle protein
- Chain s
- 50S ribosomal protein L23
- Chain t
- 50S ribosomal protein L24
- Chain w
- 50S ribosomal protein L29
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