HL_7O5B_050

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

7O5B|1|X|A|373, 7O5B|1|X|A|374, 7O5B|1|X|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_050 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1242

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7O5B|1|X|G|371
7O5B|1|X|U|372
7O5B|1|X|A|373
7O5B|1|X|A|374
7O5B|1|X|C|375
7O5B|1|X|A|376
7O5B|1|X|G|377
7O5B|1|X|C|378
7O5B|1|X|C|379

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain b

50S ribosomal protein L4

Chain t

50S ribosomal protein L24