HL_7O5B_052

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7O5B|1|X|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_052 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1086

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7O5B|1|X|G|457
7O5B|1|X|G|458
7O5B|1|X|A|459
7O5B|1|X|C|460
7O5B|1|X|C|461
7O5B|1|X|A|462
7O5B|1|X|U|463
7O5B|1|X|C|464

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains