HL_7O5B_056
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UUUUGUAGAA
- Length
- 10 nucleotides
- Bulged bases
- 7O5B|1|X|A|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O5B_056 not in the Motif Atlas
- Homologous match to HL_4WF9_018
- Geometric discrepancy: 0.1312
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
7O5B|1|X|U|610
7O5B|1|X|U|611
7O5B|1|X|U|612
7O5B|1|X|U|613
7O5B|1|X|G|614
7O5B|1|X|U|615
7O5B|1|X|A|616
7O5B|1|X|G|617
7O5B|1|X|A|618
7O5B|1|X|A|619
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain a
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L15
- Chain n
- 50S ribosomal protein L20
- Chain o
- 50S ribosomal protein L21
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