HL_7O5B_060

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_060 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.3529

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7O5B|1|X|G|759
7O5B|1|X|G|760
7O5B|1|X|U|761
7O5B|1|X|A|762
7O5B|1|X|A|763
7O5B|1|X|C|764
7O5B|1|X|A|765
7O5B|1|X|C|766

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain O

30S ribosomal protein S15

Chain Z

50S ribosomal protein L2