HL_7O5B_063

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

7O5B|1|X|U|874, 7O5B|1|X|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_063 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.1198

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

7O5B|1|X|U|873
7O5B|1|X|U|874
7O5B|1|X|U|875
7O5B|1|X|A|876
7O5B|1|X|G|877
7O5B|1|X|G|878

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain i

50S ribosomal protein L15