HL_7O5B_068

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_068 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3076

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|C|1138
7O5B|1|X|G|1139
7O5B|1|X|U|1140
7O5B|1|X|A|1141
7O5B|1|X|A|1142
7O5B|1|X|U|1143
7O5B|1|X|A|1144
7O5B|1|X|G|1145

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain W

Large signal recognition particle RNA; LSRP RNA

Chain d

50S ribosomal protein L6

Chain q

50S ribosomal protein L11