HL_7O5B_075

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UAUUGGAUA

Length

9 nucleotides

Bulged bases

7O5B|1|X|U|1500, 7O5B|1|X|U|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_075 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.456

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7O5B|1|X|U|1498
7O5B|1|X|A|1499
7O5B|1|X|U|1500
7O5B|1|X|U|1501
7O5B|1|X|G|1502
7O5B|1|X|G|1503
7O5B|1|X|A|1504
7O5B|1|X|U|1505
7O5B|1|X|A|1506

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain k

50S ribosomal protein L17