HL_7O5B_083

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUUAGCAAAAA

Length

11 nucleotides

Bulged bases

7O5B|1|X|A|1809, 7O5B|1|X|G|1810, 7O5B|1|X|C|1811, 7O5B|1|X|A|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_083 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1428

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

7O5B|1|X|U|1806
7O5B|1|X|U|1807
7O5B|1|X|U|1808
7O5B|1|X|A|1809
7O5B|1|X|G|1810
7O5B|1|X|C|1811
7O5B|1|X|A|1812
7O5B|1|X|A|1813
7O5B|1|X|A|1814
7O5B|1|X|A|1815
7O5B|1|X|A|1816

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Z

50S ribosomal protein L2

Chain h

MifM-stalling construct