HL_7O5B_085

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_085 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3162

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7O5B|1|X|C|1897
7O5B|1|X|G|1898
7O5B|1|X|U|1899
7O5B|1|X|A|1900
7O5B|1|X|A|1901
7O5B|1|X|G|1902

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains