HL_7O5B_089

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

7O5B|1|X|C|2174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_089 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5986

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

7O5B|1|X|C|2172
7O5B|1|X|G|2173
7O5B|1|X|C|2174
7O5B|1|X|C|2175
7O5B|1|X|A|2176
7O5B|1|X|G|2177

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains