HL_7O5B_109

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUUC

Length

5 nucleotides

Bulged bases

7O5B|1|Y|U|85, 7O5B|1|Y|U|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_109 not in the Motif Atlas

Homologous match to HL_5J7L_204

Geometric discrepancy: 0.4068

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7O5B|1|Y|G|84
7O5B|1|Y|U|85
7O5B|1|Y|U|86
7O5B|1|Y|U|87
7O5B|1|Y|C|88

Current chains

Chain Y

5S rRNA (112-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain j

50S ribosomal protein L16