HL_7O7Y_066

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7O7Y|1|B5|A|1923

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_066 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2587

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7O7Y|1|B5|C|1917
7O7Y|1|B5|A|1918
7O7Y|1|B5|U|1919
7O7Y|1|B5|G|1920
7O7Y|1|B5|G|1921
7O7Y|1|B5|A|1922
7O7Y|1|B5|A|1923
7O7Y|1|B5|G|1924
7O7Y|1|B5|U|1925
7O7Y|1|B5|C|1926
7O7Y|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

Ribosomal protein L12