HL_7O7Y_100
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 7O7Y|1|B5|U|4100
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_100 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.5178
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
7O7Y|1|B5|U|4098
7O7Y|1|B5|PSU|4099
7O7Y|1|B5|U|4100
7O7Y|1|B5|G|4101
7O7Y|1|B5|G|4102
7O7Y|1|B5|G|4103
7O7Y|1|B5|U|4104
7O7Y|1|B5|U|4105
7O7Y|1|B5|U|4106
7O7Y|1|B5|PSU|4107
7O7Y|1|B5|A|4108
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- Ribosomal protein eL13
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- eL42
- Chain Bv
- Ribosomal protein uL1
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