HL_7O7Y_116

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_116 not in the Motif Atlas

Geometric match to HL_3IVK_003

Geometric discrepancy: 0.3811

The information below is about HL_3IVK_003

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

7O7Y|1|B8|G|122
7O7Y|1|B8|U|123
7O7Y|1|B8|U|124
7O7Y|1|B8|C|125
7O7Y|1|B8|C|126
7O7Y|1|B8|U|127
7O7Y|1|B8|C|128

Current chains

Chain B8

5.8S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BX

uL23