HL_7O7Y_119
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUUGCAAUUAU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 7O7Y|1|A2|U|1622, 7O7Y|1|A2|U|1623, 7O7Y|1|A2|A|1624
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_119 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.2187
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7O7Y|1|A2|A|1615
7O7Y|1|A2|U|1616
7O7Y|1|A2|U|1617
7O7Y|1|A2|G|1618
7O7Y|1|A2|C|1619
7O7Y|1|A2|A|1620
7O7Y|1|A2|A|1621
7O7Y|1|A2|U|1622
7O7Y|1|A2|U|1623
7O7Y|1|A2|A|1624
7O7Y|1|A2|U|1625
7O7Y|1|A2|PSU|1626
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain Ao
- 40S ribosomal protein uS19
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- Ribosomal protein eS19
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