HL_7O7Z_017

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_017 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.4792

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7O7Z|1|A2|U|886
7O7Z|1|A2|A|887
7O7Z|1|A2|U|888
7O7Z|1|A2|U|889
7O7Z|1|A2|U|890
7O7Z|1|A2|U|891
7O7Z|1|A2|G|892
7O7Z|1|A2|U|893
7O7Z|1|A2|U|894
7O7Z|1|A2|G|895
7O7Z|1|A2|G|896
7O7Z|1|A2|U|897
7O7Z|1|A2|U|898
7O7Z|1|A2|U|899
7O7Z|1|A2|U|900
7O7Z|1|A2|C|901
7O7Z|1|A2|G|902

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11