3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GA(PSU)CAGAUACC
Length
11 nucleotides
Bulged bases
7O7Z|1|A2|C|1058, 7O7Z|1|A2|U|1062
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O7Z_020 not in the Motif Atlas
Homologous match to HL_4V88_208
Geometric discrepancy: 0.2456
The information below is about HL_4V88_208
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

7O7Z|1|A2|G|1055
7O7Z|1|A2|A|1056
7O7Z|1|A2|PSU|1057
7O7Z|1|A2|C|1058
7O7Z|1|A2|A|1059
7O7Z|1|A2|G|1060
7O7Z|1|A2|A|1061
7O7Z|1|A2|U|1062
7O7Z|1|A2|A|1063
7O7Z|1|A2|C|1064
7O7Z|1|A2|C|1065

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AE
Ribosomal protein eS26
Chain AH
Coronavirus frameshifting stimulation element
Chain AT
Transfer RNA; tRNA
Chain An
40S ribosomal protein uS11
Chain B5
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1315 s