HL_7O7Z_021

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_021 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2345

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7O7Z|1|A2|U|1115
7O7Z|1|A2|U|1116
7O7Z|1|A2|C|1117
7O7Z|1|A2|C|1118
7O7Z|1|A2|C|1119
7O7Z|1|A2|A|1120

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Aa

40S ribosomal protein S3a