HL_7O7Z_022

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_022 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0862

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|A2|G|1142
7O7Z|1|A2|G|1143
7O7Z|1|A2|A|1144
7O7Z|1|A2|A|1145
7O7Z|1|A2|A|1146
7O7Z|1|A2|C|1147

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Ribosomal protein eS26

Chain Ab

Ribosomal protein uS5

Chain Av

Ribosomal protein S15a