HL_7O7Z_030

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_030 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2737

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|A2|C|1566
7O7Z|1|A2|G|1567
7O7Z|1|A2|G|1568
7O7Z|1|A2|C|1569
7O7Z|1|A2|A|1570
7O7Z|1|A2|G|1571

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ar

40S ribosomal protein S18

Chain As

Ribosomal protein eS19