HL_7O7Z_034

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

7O7Z|1|A2|G|1850

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_034 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.0815

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|A2|G|1848
7O7Z|1|A2|U|1849
7O7Z|1|A2|G|1850
7O7Z|1|A2|MA6|1851
7O7Z|1|A2|MA6|1852
7O7Z|1|A2|C|1853

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

60s ribosomal protein l41

Chain B5

Large subunit ribosomal RNA; LSU rRNA