HL_7O7Z_040
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 7O7Z|1|B5|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_040 not in the Motif Atlas
- Geometric match to HL_4V9F_006
- Geometric discrepancy: 0.0835
- The information below is about HL_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7O7Z|1|B5|U|37
7O7Z|1|B5|A|38
7O7Z|1|B5|A|39
7O7Z|1|B5|G|40
7O7Z|1|B5|C|41
7O7Z|1|B5|A|42
7O7Z|1|B5|U|43
7O7Z|1|B5|A|44
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- Ribosomal protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bo
- eL42
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