HL_7O7Z_043

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCGGUG

Length

7 nucleotides

Bulged bases

7O7Z|1|B5|G|134, 7O7Z|1|B5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_043 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.1203

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

7O7Z|1|B5|C|131
7O7Z|1|B5|G|132
7O7Z|1|B5|C|133
7O7Z|1|B5|G|134
7O7Z|1|B5|G|135
7O7Z|1|B5|U|136
7O7Z|1|B5|G|137

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BN

Ribosomal protein L15

Chain Bh

uL29

Chain Bj

Ribosomal protein L37