HL_7O7Z_046
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 7O7Z|1|B5|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_046 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1361
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
7O7Z|1|B5|G|230
7O7Z|1|B5|U|231
7O7Z|1|B5|G|232
7O7Z|1|B5|U|233
7O7Z|1|B5|G|234
7O7Z|1|B5|A|235
7O7Z|1|B5|G|236
7O7Z|1|B5|G|237
7O7Z|1|B5|C|238
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BY
- Ribosomal protein L26
Coloring options: