HL_7O7Z_050

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_050 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3294

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7O7Z|1|B5|U|392
7O7Z|1|B5|U|393
7O7Z|1|B5|G|394
7O7Z|1|B5|A|395
7O7Z|1|B5|A|396
7O7Z|1|B5|G|397
7O7Z|1|B5|A2M|398
7O7Z|1|B5|G|399

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BK

Replicase polyprotein 1ab

Chain BP

uL22