HL_7O7Z_052

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_052 not in the Motif Atlas

Geometric match to HL_4FEN_001

Geometric discrepancy: 0.396

The information below is about HL_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20743.5

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|C|862
7O7Z|1|B5|G|863
7O7Z|1|B5|A|864
7O7Z|1|B5|G|865
7O7Z|1|B5|A|866
7O7Z|1|B5|C|867
7O7Z|1|B5|C|868
7O7Z|1|B5|U|869
7O7Z|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30