HL_7O7Z_063

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|C|1631, 7O7Z|1|B5|C|1633, 7O7Z|1|B5|A|1634

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_063 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.2212

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7O7Z|1|B5|C|1630
7O7Z|1|B5|C|1631
7O7Z|1|B5|PSU|1632
7O7Z|1|B5|C|1633
7O7Z|1|B5|A|1634
7O7Z|1|B5|G|1635

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42