HL_7O7Z_085

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

7O7Z|1|B5|C|2657

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_085 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0639

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|B5|U|2653
7O7Z|1|B5|G|2654
7O7Z|1|B5|A|2655
7O7Z|1|B5|A|2656
7O7Z|1|B5|C|2657
7O7Z|1|B5|A2M|2658
7O7Z|1|B5|G|2659

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19