HL_7O7Z_086

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|U|2717

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_086 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0672

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7O7Z|1|B5|C|2715
7O7Z|1|B5|U|2716
7O7Z|1|B5|U|2717
7O7Z|1|B5|C|2718
7O7Z|1|B5|OMG|2719
7O7Z|1|B5|G|2720

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60s ribosomal protein l41

Chain Bp

eL43