HL_7O7Z_087

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_087 not in the Motif Atlas

Homologous match to HL_8C3A_044

Geometric discrepancy: 0.5613

The information below is about HL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28980.2

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

7O7Z|1|B5|G|2744
7O7Z|1|B5|G|2745
7O7Z|1|B5|U|3327
7O7Z|1|B5|A|3328
7O7Z|1|B5|G|3329
7O7Z|1|B5|C|3330

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11

Chain BR

60S ribosomal protein L19