Motif HL_28980.2 Version HL_28980.2 of this group appears in releases 3.85 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5WTK_001 | 5WTK | 0.4206 | 8 | B | RNA (58-MER) | C | 7 | A | 15 | G | 17 | cWW | |
| 2 | HL_4TUW_002 | 4TUW | 0.2488 | 3 | Mini UNCG | C | HISTONE MRNA 3' STEM LOOP | U | 13 | U | 16 | A | 18 | cWW |
| 3 | HL_4QOZ_001 | 4QOZ | 0.1565 | 3 | Mini UNCG | A | histone mRNA stem-loop | U | 11 | U | 14 | A | 16 | cWW |
| 4 | HL_5T16_002 | 5T16 | 0.1736 | 3 | Mini UNCG | H | RNA substrate analog | G | 16 | U | 19 | C | 21 | cWW |
| 5 | HL_2ZUE_002 | 2ZUE | 0.1645 | 6 | B | tRNA | C | 931 | A | 937 | G | 939 | cWW | |
| 6 | HL_1ZBH_001 | 1ZBH | 0.1471 | 3 | Mini UNCG | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW |
| 7 | HL_8UIW_004 | 8UIW | 0.0000 | 3 | Mini UNCG | N | azaaromatic riboswitch aptamer (yjdF RNA) | U | 105 | U | 108 | A | 110 | cWW |
| 8 | HL_8C3A_044 | 8C3A | 0.1526 | 5 | 1 | LSU rRNA | G | 1948 | A | 2070 | C | 2072 | cWW | |
| 9 | HL_4OOG_001 | 4OOG | 0.2105 | 3 | Mini UNCG | D | 34-mer RNA | G | 14 | U | 17 | C | 19 | cWW |
| 10 | HL_4ILM_002 | 4ILM | 0.3109 | 4 | C | RNA (16-mer) | U | 8 | A | 12 | A | 14 | cWW | |
| 11 | HL_4ILL_001 | 4ILL | 0.3747 | 4 | R | RNA (24-mer) | U | 8 | A | 12 | A | 14 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUCA | 3 |
| GAGUCC | 2 |
| UACUAUA | 2 |
| CAAUAUCGAAG | 1 |
| CCUCCUAAG | 1 |
| UCCUUA | 1 |
| GGUUUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUC | 3 |
| AGUC | 2 |
| ACUAU | 2 |
| AAUAUCGAA | 1 |
| CUCCUAA | 1 |
| CCUU | 1 |
| GUUUAA | 1 |
- Annotations
-
- Mini UNCG (6)
- (5)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.13 | Avg 0.28 | Max 0.93
Coloring options: